PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005387-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 128aa    MW: 14769.7 Da    PI: 5.0591
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005387-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.63.1e-5218113297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eq+r+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kc++e+rkt+ngdd++wal tlGf+dy+ p+k +l++yre
  WALNUT_00005387-RA  18 NEQERLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTCEASEKCRKERRKTVNGDDVCWALETLGFDDYAGPIKRFLHRYRE 108
                         69***************************************************************************************** PP

               NF-YB  93 legek 97 
                         le ++
  WALNUT_00005387-RA 109 LEVDR 113
                         **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.5E-5011119IPR009072Histone-fold
SuperFamilySSF471131.39E-3720118IPR009072Histone-fold
PfamPF008082.4E-272387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.4E-165169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.4E-167088No hitNo description
PRINTSPR006158.4E-1689107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVDNMGASAS NEDNYMINEQ ERLLPIANVG RIMKQILPPN AKISKEAKET MQECVSEFIS  60
FVTCEASEKC RKERRKTVNG DDVCWALETL GFDDYAGPIK RFLHRYRELE VDRANQENGR  120
NIRPKDLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B7e-4117108192Transcription factor HapC (Eurofung)
4g91_B7e-4117108192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506750.18e-68PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822485e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0S3R9T84e-68A0A0S3R9T8_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TSQ64e-68A0A0L9TSQ6_PHAAN; Uncharacterized protein
STRINGGLYMA07G37840.21e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-57nuclear factor Y, subunit B5